MRIQC: individual T1w report

Summary

  • BIDS filename: sub-1002_T1w.
  • Date and time: 2020-01-13, 17:45.
  • MRIQC version: 0.15.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.621811502087143
cnr2.080527257419149
efc0.6038302218053337
fber3457.79248046875
fwhmavg3.6439866666666667
fwhmx3.54067
fwhmy3.68233
fwhmz3.70896
icvscsf0.16891499243911
icvsgm0.4388776793627543
icvswm0.3922073281981357
inumed1.5652005672454834
inurange0.6039949536323546
qi10.0
qi20.011944044449463545
rpvecsf22.24712556608809
rpvegm9.68816288810203
rpvewm12.77424994043428
sizex192
sizey224
sizez224
snrcsf1.963102871077029
snrgm9.700152041660804
snrtotal10.674191030971192
snrwm20.359318180175745
snrdcsf54.10668806207512
snrdgm133.65531432452747
snrdtotal118.28326398180862
snrdwm167.08778955882326
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk3.0313493419544795
summarybgmad3.921081304550171
summarybgmean12.074762344360352
summarybgmedian10.401062965393066
summarybgn2505983.0
summarybgp055.1813469409942625
summarybgp9523.27670040130615
summarybgstdv6.044857978820801
summarycsfk12.900266556326043
summarycsfmad146.85565185546875
summarycsfmean362.3168640136719
summarycsfmedian323.8359680175781
summarycsfn9045.0
summarycsfp05175.0981872558594
summarycsfp95634.0178222656249
summarycsfstdv164.95216369628906
summarygmk0.16794249024557883
summarygmmad78.65592193603516
summarygmmean804.6427001953125
summarygmmedian799.9454345703125
summarygmn33968.0
summarygmp05677.2451904296875
summarygmp95952.5810729980469
summarygmstdv82.46609497070312
summarywmk0.736846471985249
summarywmmad45.76729202270508
summarywmmean1001.8406982421875
summarywmmedian1000.0433959960938
summarywmn247677.0
summarywmp05923.7072143554688
summarywmp951084.0192626953124
summarywmstdv49.119590759277344
tpmoverlapcsf0.226363405585289
tpmoverlapgm0.507748007774353
tpmoverlapwm0.5508213043212891
wm2max0.5154778114877747
AcquisitionMatrixPE224
AcquisitionNumber1
AcquisitionTime14:08:59.297500
BaseResolution224
BodyPartExaminedBRAIN
CoilStringHE1-4;NE1_2
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190410 GCC6.3.0
DeviceSerialNumber166048
DwellTime1.06e-05
EchoTime0.00217
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'FM3', '2', 'FIL']
ImagingFrequency123.246
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressNorth_13th_1701_Philadelphia_PA_US_19122
InstitutionNameTemple_University_-_Weiss_Hall
InstitutionalDepartmentNameDepartment
InversionTime1.15
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingSteps223
PhaseResolution1
PixelBandwidth210
ProcedureStepDescriptionSmith_Lab_Smith_iStart
ProtocolNameT1w-anat_mpg_07sag_iso
PulseSequenceDetails%SiemensSeq%_tfl
ReceiveCoilActiveElementsHE1-4;NE1,2
ReceiveCoilNameHeadNeck_20
ReconMatrixPE224
RefLinesPE32
RepetitionTime2.4
SAR0.0455207
ScanOptionsIR_WE
ScanningSequenceGR_IR
SequenceName_tfl3d1_16ns
SequenceVariantSK_SP_MP
SeriesDescriptionT1w-anat_mpg_07sag_iso
SeriesNumber3
ShimSetting[1435, -7461, 6450, 104, 3, -127, -84, 76]
SliceThickness1
SoftwareVersionssyngo_MR_E11
StationNameAWP166048
TxRefAmp259.809
md5sum13535eba20113d6e6e2250157ca61b68
softwaremriqc
version0.15.1
Rate Image
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.